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from snakemake.utils import min_version
min_version("5.14.0")
configfile: "config.yaml" # snakemake keywords are treated like classes i.e. 2 newlines
SAMPLES = ["s1", "s2"] # strings are normalised
CONDITIONS = [
"a",
"b",
"longlonglonglonglonglonglonglonglonglonglonglonglonglonglonglong",
] # long lines are wrapped
include: "rules/foo.smk" # 2 newlines
rule all:
input:
"data/results.txt", # newlines after keywords enforced and trailing comma
rule gets_separated_by_two_newlines:
input:
files=expand(
"long/string/to/data/files/gets_broken_by_black/{sample}.{condition}",
sample=SAMPLES,
condition=CONDITIONS,
),
if True:
rule can_be_inside_python_code:
input:
"parameters",
"get_indented",
threads: 4 # Numeric params stay unindented
params:
key_val="PEP8_formatted",
run:
print("weirdly_spaced_string_gets_respaced")
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